This papersynthesizesrecentfindingsregardingmicrobialdistributionsandprocessesinthe bathypelagicocean(depth 41000 m).Abundance,productionandrespirationofprokaryotesreflect suppliesofparticulateanddissolvedorganicmattertothebathypelagiczone.Betterresolutionof carbonfluxesmediatedbydeepmicrobesrequiresfurthertestingonthevalidityofconversionfactors. Archaea, especiallymarine Crenarchaeota GroupI,areabundantindeepwaterswheretheycanfix dissolvedinorganiccarbon.Virusesappeartobeimportantinthemicrobialloopindeepwaters, displayingremarkablyhighvirustoprokaryoteabundanceratiosinsomeoceanicregions.Sequencing of 18SrRNAgenesrevealedatremendousdiversityofsmall-sizedprotistsinbathypelagicwaters. Abundancesofheterotrophicnanoflagellates(HNF)andciliatesdecreasewithdepthmoresteeplythan prokaryotes;nonetheless,dataindicatedthatHNFconsumedhalfofprokaryoteproductioninthe bathypelagiczone.Aggregatesareimportanthabitatsfordeep-watermicrobes,whichproducemore extracellularenzymes(onaper-cellbasis)thansurfacecommunities.Thetheoryofmarinegel formationprovidesaframeworktounravelcomplexinteractionsbetweenmicrobesandorganic polymers.Recentdataontheeffectsofhydrostaticpressureonmicrobialactivitiesindicatethat bathypelagicmicrobialactivityisgenerallyhigherunder in situ pressureconditionsthanatatmospheric pressures.High-throughputsequencingof16SrRNAgenesrevealedaremarkablediversityof Bacteria in the bathypelagicocean.Metagenomicsandcomparativegenomicsofpiezophilesrevealnotonlythe high diversityofdeepseamicrobesbutalsospecificfunctionalattributesofthesepiezophilicmicrobes, interpretedasanadaptationtothedeepwaterenvironment.Takentogether,thedatacompiledon bathypelagicmicrobesindicatethat,despitehigh-pressureandlow-temperatureconditions,microbes in thebathypelagicoceandynamicallyinteractwithcomplexmixturesoforganicmatter,respondingto changesintheocean’sbiogeochemicalstate
Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry and genomics / Nagata, T; Tamburini, C; Arístegui, J; Baltar, F; Bochdansky, A; Fonda, Serena; Fukuda, H; Gogou, A; Hansell, Da; Hansman, Rl; Herndl, G; Panagiotopoulos, C; Reinthaler, T; Sohrin, R; Verdugo, P; Yamada, N; Yamashita, Y; Yokokawa, T; H., Bartlett DH. - In: DEEP-SEA RESEARCH. PART 2. TOPICAL STUDIES IN OCEANOGRAPHY. - ISSN 0967-0645. - STAMPA. - 57:(2010), pp. 1519-1536. [10.1016/j.dsr2.2010.02.019]
Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry and genomics.
FONDA, SERENA;
2010-01-01
Abstract
This papersynthesizesrecentfindingsregardingmicrobialdistributionsandprocessesinthe bathypelagicocean(depth 41000 m).Abundance,productionandrespirationofprokaryotesreflect suppliesofparticulateanddissolvedorganicmattertothebathypelagiczone.Betterresolutionof carbonfluxesmediatedbydeepmicrobesrequiresfurthertestingonthevalidityofconversionfactors. Archaea, especiallymarine Crenarchaeota GroupI,areabundantindeepwaterswheretheycanfix dissolvedinorganiccarbon.Virusesappeartobeimportantinthemicrobialloopindeepwaters, displayingremarkablyhighvirustoprokaryoteabundanceratiosinsomeoceanicregions.Sequencing of 18SrRNAgenesrevealedatremendousdiversityofsmall-sizedprotistsinbathypelagicwaters. Abundancesofheterotrophicnanoflagellates(HNF)andciliatesdecreasewithdepthmoresteeplythan prokaryotes;nonetheless,dataindicatedthatHNFconsumedhalfofprokaryoteproductioninthe bathypelagiczone.Aggregatesareimportanthabitatsfordeep-watermicrobes,whichproducemore extracellularenzymes(onaper-cellbasis)thansurfacecommunities.Thetheoryofmarinegel formationprovidesaframeworktounravelcomplexinteractionsbetweenmicrobesandorganic polymers.Recentdataontheeffectsofhydrostaticpressureonmicrobialactivitiesindicatethat bathypelagicmicrobialactivityisgenerallyhigherunder in situ pressureconditionsthanatatmospheric pressures.High-throughputsequencingof16SrRNAgenesrevealedaremarkablediversityof Bacteria in the bathypelagicocean.Metagenomicsandcomparativegenomicsofpiezophilesrevealnotonlythe high diversityofdeepseamicrobesbutalsospecificfunctionalattributesofthesepiezophilicmicrobes, interpretedasanadaptationtothedeepwaterenvironment.Takentogether,thedatacompiledon bathypelagicmicrobesindicatethat,despitehigh-pressureandlow-temperatureconditions,microbes in thebathypelagicoceandynamicallyinteractwithcomplexmixturesoforganicmatter,respondingto changesintheocean’sbiogeochemicalstatePubblicazioni consigliate
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