This papersynthesizesrecentfindingsregardingmicrobialdistributionsandprocessesinthe bathypelagicocean(depth 41000 m).Abundance,productionandrespirationofprokaryotesreflect suppliesofparticulateanddissolvedorganicmattertothebathypelagiczone.Betterresolutionof carbonfluxesmediatedbydeepmicrobesrequiresfurthertestingonthevalidityofconversionfactors. Archaea, especiallymarine Crenarchaeota GroupI,areabundantindeepwaterswheretheycanfix dissolvedinorganiccarbon.Virusesappeartobeimportantinthemicrobialloopindeepwaters, displayingremarkablyhighvirustoprokaryoteabundanceratiosinsomeoceanicregions.Sequencing of 18SrRNAgenesrevealedatremendousdiversityofsmall-sizedprotistsinbathypelagicwaters. Abundancesofheterotrophicnanoflagellates(HNF)andciliatesdecreasewithdepthmoresteeplythan prokaryotes;nonetheless,dataindicatedthatHNFconsumedhalfofprokaryoteproductioninthe bathypelagiczone.Aggregatesareimportanthabitatsfordeep-watermicrobes,whichproducemore extracellularenzymes(onaper-cellbasis)thansurfacecommunities.Thetheoryofmarinegel formationprovidesaframeworktounravelcomplexinteractionsbetweenmicrobesandorganic polymers.Recentdataontheeffectsofhydrostaticpressureonmicrobialactivitiesindicatethat bathypelagicmicrobialactivityisgenerallyhigherunder in situ pressureconditionsthanatatmospheric pressures.High-throughputsequencingof16SrRNAgenesrevealedaremarkablediversityof Bacteria in the bathypelagicocean.Metagenomicsandcomparativegenomicsofpiezophilesrevealnotonlythe high diversityofdeepseamicrobesbutalsospecificfunctionalattributesofthesepiezophilicmicrobes, interpretedasanadaptationtothedeepwaterenvironment.Takentogether,thedatacompiledon bathypelagicmicrobesindicatethat,despitehigh-pressureandlow-temperatureconditions,microbes in thebathypelagicoceandynamicallyinteractwithcomplexmixturesoforganicmatter,respondingto changesintheocean’sbiogeochemicalstate
Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry and genomics / Nagata, T., Tamburini, C., Arístegui, J., Baltar, F., Bochdansky, A., Fonda, S., Fukuda, H., Gogou, A., Hansell, D.a., Hansman, R.l., Herndl, G., Panagiotopoulos, C., Reinthaler, T., Sohrin, R., Verdugo, P., Yamada, N., Yamashita, Y., Yokokawa, T., H., B.D.. - In: DEEP-SEA RESEARCH. PART 2. TOPICAL STUDIES IN OCEANOGRAPHY. - ISSN 0967-0645. - STAMPA. - 57:(2010), pp. 1519-1536. [10.1016/j.dsr2.2010.02.019]
Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry and genomics.
FONDA, SERENA;
2010-01-01
Abstract
This papersynthesizesrecentfindingsregardingmicrobialdistributionsandprocessesinthe bathypelagicocean(depth 41000 m).Abundance,productionandrespirationofprokaryotesreflect suppliesofparticulateanddissolvedorganicmattertothebathypelagiczone.Betterresolutionof carbonfluxesmediatedbydeepmicrobesrequiresfurthertestingonthevalidityofconversionfactors. Archaea, especiallymarine Crenarchaeota GroupI,areabundantindeepwaterswheretheycanfix dissolvedinorganiccarbon.Virusesappeartobeimportantinthemicrobialloopindeepwaters, displayingremarkablyhighvirustoprokaryoteabundanceratiosinsomeoceanicregions.Sequencing of 18SrRNAgenesrevealedatremendousdiversityofsmall-sizedprotistsinbathypelagicwaters. Abundancesofheterotrophicnanoflagellates(HNF)andciliatesdecreasewithdepthmoresteeplythan prokaryotes;nonetheless,dataindicatedthatHNFconsumedhalfofprokaryoteproductioninthe bathypelagiczone.Aggregatesareimportanthabitatsfordeep-watermicrobes,whichproducemore extracellularenzymes(onaper-cellbasis)thansurfacecommunities.Thetheoryofmarinegel formationprovidesaframeworktounravelcomplexinteractionsbetweenmicrobesandorganic polymers.Recentdataontheeffectsofhydrostaticpressureonmicrobialactivitiesindicatethat bathypelagicmicrobialactivityisgenerallyhigherunder in situ pressureconditionsthanatatmospheric pressures.High-throughputsequencingof16SrRNAgenesrevealedaremarkablediversityof Bacteria in the bathypelagicocean.Metagenomicsandcomparativegenomicsofpiezophilesrevealnotonlythe high diversityofdeepseamicrobesbutalsospecificfunctionalattributesofthesepiezophilicmicrobes, interpretedasanadaptationtothedeepwaterenvironment.Takentogether,thedatacompiledon bathypelagicmicrobesindicatethat,despitehigh-pressureandlow-temperatureconditions,microbes in thebathypelagicoceandynamicallyinteractwithcomplexmixturesoforganicmatter,respondingto changesintheocean’sbiogeochemicalstatePubblicazioni consigliate
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